AD
Data & Repro
Adaptyv
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein sequences via API or…
K-Dense-AI/claude-scientific-skillsView
Data & Repro
AL
alphafold
Maintainer FreedomIntelligence · Last updated April 1, 2026
Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence metrics (pLDDT, pTM, ipTM), (4) Self-consistency validation of designs, (5) Multi-chain complex prediction with AlphaFold-Multimer. For faster single-chain prediction, use esm. For QC thresholds, use protein-….
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/alphafold
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- First time? See Installation Guide to set up Modal and biomodals.
Source Doc
Excerpt From SKILL.md
Option 1: ColabFold (recommended for multimer)
GPU: A100 (40GB) | Timeout: 3600s default
Key parameters
| Parameter | Default | Options | Description |
|---|---|---|---|
--model_preset | monomer | monomer/multimer | Model type |
--num_recycle | 3 | 1-20 | Recycling iterations |
--max_template_date | - | YYYY-MM-DD | Template cutoff |
--use_templates | True | True/False | Use template search |
Successful run
What good output looks like:
- pLDDT: > 85 (mean, on 0-100 scale) or > 0.85 (normalized)
- pTM: > 0.70
- ipTM: > 0.50 for complexes
- PAE_interface: < 10
Use cases
- Use alphafold in research workflows aligned with this subject area.
- Follow the upstream documentation for the full working procedure.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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