Data & ReproProtein Structure & DesignK-Dense-AI/claude-scientific-skillsData & Reproduction

bindingdb-database

Maintainer Kuan-lin Huang · Last updated April 1, 2026

BindingDB (https://www.bindingdb.org/) is the primary public database of measured drug-protein binding affinities. It contains over 3 million binding data records for ~1.4 million compounds tested against ~9,200 protein targets, curated from scientific literature and patent literature. BindingDB stores quantitative binding measurements (Ki, Kd, IC50, EC50) essential for drug discovery, pharmacology, and computational.

Claude CodeOpenClawNanoClawAnalysisReproductionbindingdb-databasechemistrydatabasegeneral

Original source

K-Dense-AI/claude-scientific-skills

https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/bindingdb-database

Maintainer: Kuan-lin Huang
License: CC-BY-3.0
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Use cases

Use bindingdb-database in research workflows aligned with this subject area.
Follow the upstream documentation for the full working procedure.
**Target-based drug discovery**: What known compounds bind to a target protein? What are their affinities?
**SAR analysis**: How do structural modifications affect binding affinity for a series of analogs?

Not for

Do not rely on this catalog entry alone for installation or maintenance details.

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