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bio-data-visualization-circos-plots
Maintainer FreedomIntelligence · Last updated April 1, 2026
Circular genome visualization with Circos or pycirclize.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-data-visualization-circos-plots
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Circular genome visualizations for displaying multiple data tracks around chromosome ideograms.
- karyotype = data/karyotype.human.hg38.txt.
- <ideogram> <spacing> default = 0.005r </spacing> radius = 0.90r thickness = 20p fill = yes </ideogram>.
- <image> dir = output file = circos.png png = yes svg = yes radius = 1500p </image>.
- <<include etc/colors_fonts_patterns.conf>> <<include etc/housekeeping.conf>>.
Source Doc
Excerpt From SKILL.md
Tool Options
| Tool | Language | Best For |
|---|---|---|
| Circos | Perl/CLI | Publication-quality, complex layouts |
| pyCircos | Python | Programmatic generation, integration |
| circlize | R | Quick plots, Bioconductor integration |
Installation
conda install -c bioconda circos
## Basic Configuration
Circos requires configuration files defining the plot structure.
Use cases
- Use bio-data-visualization-circos-plots to prepare publication-quality figures.
- Apply bio-data-visualization-circos-plots when results need clear visual communication.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- data-visualization/genome-tracks - Linear genome visualization
- hi-c-analysis/hic-visualization - Hi-C-specific circos
- copy-number/cnv-visualization - CNV visualization
- variant-calling/structural-variant-calling - SV data for circos
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