Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

bio-data-visualization-genome-browser-tracks

Maintainer FreedomIntelligence · Last updated April 1, 2026

Generate genome browser tracks and IGV sessions from BAM/BigWig.

OpenClawNanoClawAnalysisReproductionbio-data-visualization-genome-browser-tracks🧠 bioos extended suitebioos extended bioinformatics suitegenerate

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-data-visualization-genome-browser-tracks

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

pyGenomeTracks --tracks tracks.ini --region chr1:1000000-2000000 \ --outFileName region.png --dpi 300.
for region in chr1:1000000-2000000 chr2:5000000-6000000; do pyGenomeTracks --tracks tracks.ini --region $region \ --outFileName "${region//:/_}.png" --dpi 300 done.

Source Doc

Excerpt From SKILL.md

pyGenomeTracks Python API

import pygenometracks.tracks as pygtk
from pygenometracks import plotTracks

## Programmatic track configuration

tracks = '''
[x-axis]
where = top

[bigwig]
file = coverage.bw
title = ChIP-seq
height = 4
color = #4DBBD5

[bed]
file = peaks.narrowPeak
title = Peaks
height = 1
color = #E64B35
'''

## Write config and plot

with open('tracks.ini', 'w') as f:
    f.write(tracks)

Use cases

Use bio-data-visualization-genome-browser-tracks for genomics and bioinformatics workflows.
Apply bio-data-visualization-genome-browser-tracks to sequencing, variant, or omics analysis tasks.