SCI Skills

EN Index
Data & ReproScientific VisualizationFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction
BI

bio-data-visualization-genome-tracks

Maintainer FreedomIntelligence · Last updated April 1, 2026

Multi-panel genome track plots with pyGenomeTracks.

OpenClawNanoClawAnalysisWritingbio-data-visualization-genome-tracks🧠 bioos extended suitebioos extended bioinformatics suitemulti

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-data-visualization-genome-tracks

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • cat > tracks.ini << 'EOF' [bigwig] file = coverage.bw title = Coverage height = 4 color = #4DBBD5 min_value = 0.
  • [peaks] file = peaks.bed title = Peaks color = #E64B35 height = 2 labels = false.
  • [genes] file = genes.gtf title = Genes height = 5 fontsize = 10 style = flybase color = #3C5488.
  • pyGenomeTracks --tracks tracks.ini --region chr1:1000000-2000000 \ --outFileName tracks.png --dpi 150.

Source Doc

Excerpt From SKILL.md

Gviz (R)

library(Gviz)
library(GenomicRanges)

## Ideogram

itrack <- IdeogramTrack(genome = 'hg38', chromosome = 'chr1')

## Gene model

library(TxDb.Hsapiens.UCSC.hg38.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg38.knownGene
grtrack <- GeneRegionTrack(txdb, genome = 'hg38', chromosome = 'chr1',
                            name = 'Genes', transcriptAnnotation = 'symbol')

Use cases

  • Use bio-data-visualization-genome-tracks to prepare publication-quality figures.
  • Apply bio-data-visualization-genome-tracks when results need clear visual communication.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • genome-intervals/bigwig-tracks - BigWig file handling
  • chip-seq/chipseq-visualization - ChIP-specific tracks
  • hi-c-analysis/hic-visualization - Hi-C contact maps

Related skills

Related skills

Back to directory
BI
Data & ReproScientific Visualization

bio-chipseq-visualization

Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. Create heatmaps, profile plots, and genome browser tracks. Visualize signal a…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproScientific Visualization

bio-consensus-sequences

Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific refer…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproScientific Visualization

bio-copy-number-cnv-visualization

Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or oth…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproScientific Visualization

bio-data-visualization-circos-plots

Circular genome visualization with Circos or pycirclize.

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView