Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

bio-epitranscriptomics-merip-preprocessing

Maintainer FreedomIntelligence · Last updated April 1, 2026

Preprocess MeRIP-seq data for m6A methylation analysis.

OpenClawNanoClawAnalysisReproductionbio-epitranscriptomics-merip-preprocessing🧠 bioos extended suitebioos extended bioinformatics suitepreprocess

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-epitranscriptomics-merip-preprocessing

Skill Snapshot

2 min

STAR --runMode genomeGenerate \ --genomeDir star_index \ --genomeFastaFiles genome.fa \ --sjdbGTFfile genes.gtf.
for sample in IP_rep1 IP_rep2 Input_rep1 Input_rep2; do STAR --genomeDir star_index \ --readFilesIn ${sample}_R1.fastq.gz ${sample}_R2.fastq.gz \ --readFilesCommand zcat \ --outSAMtype BAM SortedByCoordinate \ --outFileNamePrefix ${sample}_ done.

Source Doc

for bam in *Aligned.sortedByCoord.out.bam; do samtools index $bam done

samtools flagstat IP_rep1_Aligned.sortedByCoord.out.bam


## IP/Input Correlation

```python
import deeptools.plotCorrelation as pc

Use bio-epitranscriptomics-merip-preprocessing for genomics and bioinformatics workflows.
Apply bio-epitranscriptomics-merip-preprocessing to sequencing, variant, or omics analysis tasks.