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Data & ReproScientific VisualizationFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction
BI

bio-epitranscriptomics-modification-visualization

Maintainer FreedomIntelligence · Last updated April 1, 2026

Visualize RNA modification profiles and metagene plots.

OpenClawNanoClawAnalysisWritingbio-epitranscriptomics-modification-visualization🧠 bioos extended suitebioos extended bioinformatics suitevisualize

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-epitranscriptomics-modification-visualization

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • peaks <- import('m6a_peaks.bed').
  • GuitarPlot( peaks, txdb = TxDb.Hsapiens.UCSC.hg38.knownGene, saveToPDFprefix = 'm6a_metagene' ).

Source Doc

Excerpt From SKILL.md

Metagene Plots with Guitar

library(Guitar)
library(TxDb.Hsapiens.UCSC.hg38.knownGene)

## Create bigWig from IP/Input ratio

bamCompare -b1 IP.bam -b2 Input.bam \
    --scaleFactors 1:1 \
    --ratio log2 \
    -o IP_over_Input.bw

## Metagene around stop codons

computeMatrix scale-regions \
    -S IP_over_Input.bw \
    -R genes.bed \
    --regionBodyLength 2000 \
    -a 500 -b 500 \
    -o matrix.gz

plotProfile -m matrix.gz -o metagene.pdf

Use cases

  • Use bio-epitranscriptomics-modification-visualization to prepare publication-quality figures.
  • Apply bio-epitranscriptomics-modification-visualization when results need clear visual communication.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • epitranscriptomics/m6a-peak-calling - Generate peaks for visualization
  • data-visualization/genome-tracks - IGV, UCSC integration
  • chip-seq/chipseq-visualization - Similar techniques

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