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bio-expression-matrix-counts-ingest

Maintainer FreedomIntelligence · Last updated April 1, 2026

Load and validate count matrices from multiple quantification tools.

OpenClawNanoClawAnalysisReproductionbio-expression-matrix-counts-ingest🧠 bioos extended suitebioos extended bioinformatics suiteload

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-expression-matrix-counts-ingest

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • counts = pd.read_csv('counts.tsv', sep='\t', index_col=0).
  • counts = pd.read_csv('counts.csv', index_col=0).

Source Doc

Excerpt From SKILL.md

Basic CSV/TSV Loading

import pandas as pd

## Skip comment lines

counts = pd.read_csv('counts.txt', sep='\t', index_col=0, comment='#')

featureCounts Output

import pandas as pd

Use cases

  • Use bio-expression-matrix-counts-ingest for genomics and bioinformatics workflows.
  • Apply bio-expression-matrix-counts-ingest to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • rna-quantification/featurecounts-counting - Generate featureCounts output
  • rna-quantification/alignment-free-quant - Generate Salmon/kallisto output
  • expression-matrix/sparse-handling - Memory-efficient storage
  • expression-matrix/gene-id-mapping - Convert gene identifiers

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