Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

bio-expression-matrix-gene-id-mapping

Maintainer FreedomIntelligence · Last updated April 1, 2026

Map between Ensembl, Entrez, HGNC, and gene symbol identifiers.

OpenClawNanoClawAnalysisReproductionbio-expression-matrix-gene-id-mapping🧠 bioos extended suitebioos extended bioinformatics suitemap

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-expression-matrix-gene-id-mapping

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

ensembl_ids = ['ENSG00000141510', 'ENSG00000012048', 'ENSG00000141736'] results = mg.querymany(ensembl_ids, scopes='ensembl.gene', fields='symbol', species='human') mapping = {r['query']: r.get('symbol', None) for r in results}.
symbols = ['TP53', 'BRCA1', 'ERBB2'] results = mg.querymany(symbols, scopes='symbol', fields='entrezgene', species='human') mapping = {r['query']: r.get('entrezgene', None) for r in results}.

Source Doc

Excerpt From SKILL.md

Python: mygene

import mygene
import pandas as pd

mg = mygene.MyGeneInfo()

## Ensembl to multiple fields

results = mg.querymany(ensembl_ids, scopes='ensembl.gene',
    fields=['symbol', 'entrezgene', 'uniprot'], species='human')

Python: pyensembl

from pyensembl import EnsemblRelease

Use cases

Use bio-expression-matrix-gene-id-mapping for genomics and bioinformatics workflows.
Apply bio-expression-matrix-gene-id-mapping to sequencing, variant, or omics analysis tasks.