AG
Data & Repro
agent-browser
Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test w…
FreedomIntelligence/OpenClaw-Medical-SkillsView
Data & Repro
BI
bio-expression-matrix-metadata-joins
Maintainer FreedomIntelligence · Last updated April 1, 2026
Join sample metadata to expression matrices for downstream analysis.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-expression-matrix-metadata-joins
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- metadata = pd.read_csv('sample_info.csv', index_col=0).
- counts = pd.read_csv('counts.tsv', sep='\t', index_col=0).
Source Doc
Excerpt From SKILL.md
Load Sample Metadata
import pandas as pd
## Metadata: samples x attributes
metadata = pd.read_csv('metadata.csv', index_col=0)
## Ensure sample order matches
common_samples = counts.columns.intersection(metadata.index)
counts = counts[common_samples]
metadata = metadata.loc[common_samples]
Use cases
- Use bio-expression-matrix-metadata-joins for genomics and bioinformatics workflows.
- Apply bio-expression-matrix-metadata-joins to sequencing, variant, or omics analysis tasks.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- expression-matrix/counts-ingest - Load count data
- expression-matrix/gene-id-mapping - Convert gene IDs
- differential-expression/deseq2-basics - Downstream analysis
- single-cell/preprocessing - Single-cell metadata handling
Related skills
Related skills
AL
Data & Repro
alpha-vantage
Access 20+ years of global financial data: equities, options, forex, crypto, commodities, economic indicators, and 50+ technical indicators.
K-Dense-AI/claude-scientific-skillsView
BI
Data & Repro
bio-alignment-filtering
Filter alignments by flag, quality, region, or paired status.
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & Repro
bio-alignment-indexing
Index BAM/CRAM files with samtools index for random access.
FreedomIntelligence/OpenClaw-Medical-SkillsView