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bio-genome-assembly-metagenome-assembly

Maintainer FreedomIntelligence · Last updated April 1, 2026

Metagenome assembly reconstructs genomes from mixed microbial communities. Long reads enable recovery of complete circular genomes and resolution of strain-level differences.

OpenClawNanoClawAnalysisReproductionbio-genome-assembly-metagenome-assembly🧠 bioos extended suitebioos extended bioinformatics suitemetagenomic

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-genome-assembly-metagenome-assembly

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

Metagenome assembly reconstructs genomes from mixed microbial communities. Long reads enable recovery of complete circular genomes and resolution of strain-level differences.
flye --nano-raw reads.fastq.gz \ --meta \ --out-dir flye_meta \ --threads 32.

Source Doc

Excerpt From SKILL.md

PacBio HiFi metagenome

flye --pacbio-hifi reads.hifi.fastq.gz
--meta
--out-dir flye_meta_hifi
--threads 32

Illumina paired-end metagenome

metaspades.py -1 R1.fastq.gz -2 R2.fastq.gz
-o spades_meta
-t 32
-m 500

With multiple libraries

metaspades.py
--pe1-1 lib1_R1.fq.gz --pe1-2 lib1_R2.fq.gz
--pe2-1 lib2_R1.fq.gz --pe2-2 lib2_R2.fq.gz
-o spades_meta -t 32

Use cases

Use bio-genome-assembly-metagenome-assembly for genomics and bioinformatics workflows.
Apply bio-genome-assembly-metagenome-assembly to sequencing, variant, or omics analysis tasks.