Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

bio-genome-intervals-interval-arithmetic

Maintainer FreedomIntelligence · Last updated April 1, 2026

Intersect, subtract, merge, and complement genomic intervals.

OpenClawNanoClawAnalysisReproductionbio-genome-intervals-interval-arithmetic🧠 bioos extended suitebioos extended bioinformatics suiteintersect

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-genome-intervals-interval-arithmetic

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

Core set operations on genomic intervals using bedtools (CLI) and pybedtools (Python).
bedtools intersect -a peaks.bed -b genes.bed > overlapping.bed.

Source Doc

Excerpt From SKILL.md

Report original A intervals (default behavior)

bedtools intersect -a peaks.bed -b genes.bed > peaks_in_genes.bed

Report overlapping portion only

bedtools intersect -a peaks.bed -b genes.bed > overlap_regions.bed

Report both A and B fields

bedtools intersect -a peaks.bed -b genes.bed -wa -wb > with_gene_info.bed

Use cases

Use bio-genome-intervals-interval-arithmetic for genomics and bioinformatics workflows.
Apply bio-genome-intervals-interval-arithmetic to sequencing, variant, or omics analysis tasks.

Not for

Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

bed-file-basics - BED format and creation
proximity-operations - closest, window, flank, slop
coverage-analysis - coverage calculations
chip-seq/peak-calling - peak file operations

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