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bio-genome-intervals-proximity-operations

Maintainer FreedomIntelligence · Last updated April 1, 2026

Find nearest features and compute distances between intervals.

OpenClawNanoClawAnalysisReproductionbio-genome-intervals-proximity-operations🧠 bioos extended suitebioos extended bioinformatics suitefind

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-genome-intervals-proximity-operations

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • Operations for finding nearby features and extending intervals using bedtools and pybedtools.
  • bedtools closest -a peaks.bed -b genes.bed > peaks_with_nearest.bed.

Source Doc

Excerpt From SKILL.md

Report distance to nearest feature

bedtools closest -a peaks.bed -b genes.bed -d > with_distance.bed

Ignore overlapping features (find next nearest)

bedtools closest -a peaks.bed -b genes.bed -io > nearest_non_overlap.bed

Ignore features on different strands

bedtools closest -a peaks.bed -b genes.bed -s > same_strand.bed

Use cases

  • Use bio-genome-intervals-proximity-operations for genomics and bioinformatics workflows.
  • Apply bio-genome-intervals-proximity-operations to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • bed-file-basics - BED format fundamentals
  • interval-arithmetic - intersect, subtract, merge
  • gtf-gff-handling - Extract TSS from annotations
  • chip-seq/peak-annotation - Peak annotation

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