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bio-motif-search

Maintainer FreedomIntelligence · Last updated April 1, 2026

Search sequences for regulatory motifs using FIMO, MAST, or regex.

OpenClawNanoClawAnalysisReproductionbio-motif-search🧠 bioos extended suitebioos extended bioinformatics suitesearch

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-motif-search

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

Find patterns and motifs in biological sequences using Biopython and regex.
matches = regex_search(seq, 'ATG').

Source Doc

Excerpt From SKILL.md

find() - First Occurrence

Returns -1 if not found.

Regex Pattern Search

For ambiguous or flexible patterns:

def regex_search(seq, pattern):
    seq_str = str(seq)
    return [(m.start(), m.group()) for m in re.finditer(pattern, seq_str)]

## Find TATA box variants (TATAAA with possible variations)

matches = regex_search(seq, 'TATA[AT]A[AT]')

Use cases

Use bio-motif-search for clinical, translational, or medical research tasks.
Apply bio-motif-search when healthcare-specific guidance is required.

Not for

Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

seq-objects - Create Seq objects for searching
reverse-complement - Search both strands for motifs
sequence-io/filter-sequences - Filter sequences that contain specific motifs
restriction-analysis/restriction-sites - For restriction enzyme site searching
database-access - Download motif databases from NCBI/JASPAR

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