SCI Skills

EN Index
Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction
BI

bio-population-genetics-population-structure

Maintainer FreedomIntelligence · Last updated April 1, 2026

Population stratification with PCA, ADMIXTURE, and STRUCTURE.

OpenClawNanoClawAnalysisReproductionbio-population-genetics-population-structure🧠 bioos extended suitebioos extended bioinformatics suitepopulation

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-population-genetics-population-structure

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • Analyze genetic ancestry and population stratification using PCA and ADMIXTURE.
  • plink2 --bfile data --pca 10 --out pca_results.

Source Doc

Excerpt From SKILL.md

More PCs

plink2 --bfile data --pca 20 --out pca_results

Approximate PCA (faster for large datasets)

plink2 --bfile data --pca 10 approx --out pca_results

Output variant loadings

plink2 --bfile data --pca 10 var-wts --out pca_results

Use cases

  • Use bio-population-genetics-population-structure for genomics and bioinformatics workflows.
  • Apply bio-population-genetics-population-structure to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • plink-basics - Data preparation and QC
  • linkage-disequilibrium - LD pruning details
  • association-testing - Use PCs as covariates

Related skills

Related skills

Back to directory
AG
Data & ReproBioinformatics & Genomics

agent-browser

Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test w…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
AL
Data & ReproBioinformatics & Genomics

alpha-vantage

Access 20+ years of global financial data: equities, options, forex, crypto, commodities, economic indicators, and 50+ technical indicators.

Claude CodeAnalysis
K-Dense-AI/claude-scientific-skillsView
BI
Data & ReproBioinformatics & Genomics

bio-alignment-filtering

Filter alignments by flag, quality, region, or paired status.

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproBioinformatics & Genomics

bio-alignment-indexing

Index BAM/CRAM files with samtools index for random access.

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView