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bio-population-genetics-scikit-allel-analysis

Maintainer FreedomIntelligence · Last updated April 1, 2026

Population genetics analysis with scikit-allel: diversity, Fst, haplotypes.

OpenClawNanoClawAnalysisWritingbio-population-genetics-scikit-allel-analysis🧠 bioos extended suitebioos extended bioinformatics suitepopulation

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-population-genetics-scikit-allel-analysis

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • Python library for population genetics analysis with efficient array data structures.
  • samples = callset['samples'] genotypes = callset['calldata/GT'] positions = callset['variants/POS'] chroms = callset['variants/CHROM'].

Source Doc

Excerpt From SKILL.md

Load VCF

import allel

callset = allel.read_vcf('data.vcf.gz')

print(callset.keys())

Use cases

  • Use bio-population-genetics-scikit-allel-analysis to prepare publication-quality figures.
  • Apply bio-population-genetics-scikit-allel-analysis when results need clear visual communication.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • selection-statistics - Fst, Tajima's D, iHS with scikit-allel
  • linkage-disequilibrium - LD calculations in Python
  • variant-calling/vcf-basics - VCF format and bcftools

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