BI
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bio-metabolomics-lipidomics
Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSear…
FreedomIntelligence/OpenClaw-Medical-SkillsView
Data & Repro
BI
bio-proteomics-spectral-libraries
Maintainer FreedomIntelligence · Last updated April 1, 2026
Build, manage, and search spectral libraries for proteomics. Use when creating or working with spectral libraries for DIA analysis. Covers DDA-based library generation, predicted libraries (Prosit, DeepLC), and library formats.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-spectral-libraries
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- CLI: spectrast (TPP) for consensus library building from search results.
- CLI: Prosit/DeepLC for deep learning-predicted spectral libraries.
- Python: pandas for library format conversion and quality filtering.
- Build a spectral library for DIA analysis" → Create, filter, and manage spectral libraries from DDA experiments or predicted spectra for use in DIA quantification workflows. CLI: spectrast (TPP) for consensus library building from search results CLI: Prosit/DeepLC for deep learning-predicted spectral libraries Python: pandas for library format conversion and quality filtering.
- spectrast -cNlibrary.splib -cAC search_results.pep.xml.
Source Doc
Excerpt From SKILL.md
Filter library for quality
spectrast -cNfiltered.splib -cAQ library.splib
Convert to other formats
spectrast -cNlibrary.tsv -cM library.splib
## Convert to TSV format
easypqp convert \
--in library.pqp \
--out library.tsv \
--format openswath
Use cases
- Use when creating or working with spectral libraries for DIA analysis.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- dia-analysis - Use libraries in DIA workflows
- peptide-identification - Generate search results for library building
- data-import - Load MS data for library generation
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