Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

bio-reporting-automated-qc-reports

Maintainer FreedomIntelligence · Last updated April 1, 2026

Generate automated MultiQC-style reports for omics pipelines.

OpenClawNanoClawAnalysisReproductionbio-reporting-automated-qc-reports🧠 bioos extended suitebioos extended bioinformatics suitegenerate

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-reporting-automated-qc-reports

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

multiqc results/ -o qc_report/.
multiqc results/ -n my_project_qc.

Source Doc

Excerpt From SKILL.md

Include specific tools only

multiqc results/ --module fastqc --module star


## Supported Tools

MultiQC recognizes outputs from 100+ bioinformatics tools:

| Category | Tools |
|----------|-------|
| Read QC | FastQC, fastp, Cutadapt |
| Alignment | STAR, HISAT2, BWA, Bowtie2 |
| Quantification | featureCounts, Salmon, kallisto |
| Variant Calling | bcftools, GATK |
| Single-cell | CellRanger, STARsolo |

## Configuration

Create `multiqc_config.yaml`:

```yaml
title: "RNA-seq QC Report"
subtitle: "Project XYZ"
intro_text: "QC metrics for all samples"

Use cases

Use bio-reporting-automated-qc-reports for genomics and bioinformatics workflows.
Apply bio-reporting-automated-qc-reports to sequencing, variant, or omics analysis tasks.