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Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction
BI

bio-reporting-quarto-reports

Maintainer FreedomIntelligence · Last updated April 1, 2026

Build Quarto multi-format reports (HTML/PDF) from analysis code.

OpenClawNanoClawAnalysisReproductionbio-reporting-quarto-reports🧠 bioos extended suitebioos extended bioinformatics suitebuild

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-reporting-quarto-reports

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • quarto render report.qmd.
  • quarto render report.qmd --to pdf.

Source Doc

Excerpt From SKILL.md

Python Document

{python} import scanpy as sc import matplotlib.pyplot as plt

adata = sc.read_h5ad('data.h5ad') sc.pl.umap(adata, color='leiden') `

R Document

{r} library(DESeq2) dds <- DESeqDataSetFromMatrix(counts, metadata, ~ condition) dds <- DESeq(dds) `

Render with parameters

quarto render report.qmd -P sample:sample2 -P threshold:0.01

Use cases

  • Use bio-reporting-quarto-reports for genomics and bioinformatics workflows.
  • Apply bio-reporting-quarto-reports to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • reporting/rmarkdown-reports - R-focused alternative
  • data-visualization/ggplot2-fundamentals - R visualizations
  • workflow-management/snakemake-workflows - Pipeline integration

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