Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction
BI

bio-restriction-fragment-analysis

Maintainer FreedomIntelligence · Last updated April 1, 2026

Analyze restriction fragment patterns for cloning and gel prediction.

OpenClawNanoClawAnalysisReproductionbio-restriction-fragment-analysis🧠 bioos extended suitebioos extended bioinformatics suiteanalyze

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-restriction-fragment-analysis

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • fragments = EcoRI.catalyze(seq)[0].
  • sizes = [len(f) for f in fragments] print(f'Fragment sizes: {sorted(sizes, reverse=True)}').

Source Doc

Excerpt From SKILL.md

Get Fragment Sizes

from Bio import SeqIO
from Bio.Restriction import EcoRI

record = SeqIO.read('sequence.fasta', 'fasta')
seq = record.seq

## Linear vs Circular Digestion

```python
from Bio.Restriction import EcoRI

## Linear DNA

fragments_linear = EcoRI.catalyze(seq, linear=True)[0]

Use cases

  • Use bio-restriction-fragment-analysis for genomics and bioinformatics workflows.
  • Apply bio-restriction-fragment-analysis to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • restriction-sites - Find cut positions for fragment calculation
  • restriction-mapping - Visualize fragment positions
  • enzyme-selection - Choose enzymes for desired fragments

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