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bio-seq-objects

Maintainer FreedomIntelligence · Last updated April 1, 2026

Work with BioPython sequence objects: SeqRecord, features, annotations.

OpenClawNanoClawAnalysisReproductionbio-seq-objects🧠 bioos extended suitebioos extended bioinformatics suitework

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-seq-objects

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • Create and manipulate biological sequence objects using Biopython.
  • rc_record = record.reverse_complement(id='gene1_rc', description='reverse complement').

Source Doc

Excerpt From SKILL.md

Seq - Immutable Sequence

The basic sequence object. Immutable like Python strings.

Seq objects support string-like operations:

MutableSeq - Mutable Sequence

For in-place modifications when performance matters.

Convert between types:

SeqRecord - Annotated Sequence

Sequence with metadata for file I/O and analysis.

SeqRecord attributes:

Use cases

  • Use bio-seq-objects for genomics and bioinformatics workflows.
  • Apply bio-seq-objects to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • sequence-io/read-sequences - Parse files to get SeqRecord objects
  • sequence-io/write-sequences - Write SeqRecord objects to files
  • transcription-translation - Transform Seq objects (DNA to protein)
  • reverse-complement - Get reverse complement of Seq
  • sequence-slicing - Slice and extract from Seq/SeqRecord
  • database-access/entrez-fetch - Fetch sequences from NCBI as SeqRecords

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