Data & ReproBioinformatics & GenomicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

bio-sequence-slicing

Maintainer FreedomIntelligence · Last updated April 1, 2026

Slice, extract, and manipulate subsequences from FASTA/FASTQ.

OpenClawNanoClawAnalysisReproductionbio-sequence-slicing🧠 bioos extended suitebioos extended bioinformatics suiteslice

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-sequence-slicing

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

Extract, slice, and concatenate sequences using Biopython's Seq objects.

Source Doc

Excerpt From SKILL.md

Slicing (Extract Region)

Note: Slicing returns a Seq object, not a string.

Concatenation

Can also concatenate with strings:

Extract with 1-Based Coordinates

Biology often uses 1-based coordinates. Convert to 0-based:

Use cases

Use bio-sequence-slicing for genomics and bioinformatics workflows.
Apply bio-sequence-slicing to sequencing, variant, or omics analysis tasks.

Not for

Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

seq-objects - Create Seq and SeqRecord objects
sequence-io/read-sequences - Parse GenBank files with features to extract
transcription-translation - Translate extracted CDS regions
alignment-files - Extract sequences from BAM using samtools fasta/fastq

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