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bio-small-rna-seq-mirge3-analysis

Maintainer FreedomIntelligence · Last updated April 1, 2026

miRNA annotation and quantification with miRge3.0.

OpenClawNanoClawAnalysisReproductionbio-small-rna-seq-mirge3-analysis🧠 bioos extended suitebioos extended bioinformatics suitemirna

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-small-rna-seq-mirge3-analysis

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • miRge3.0 annotate \ -s sample1.fastq.gz,sample2.fastq.gz \ -lib miRge3_libs \ -on human \ -db mirbase \ -o output_dir \ -a TGGAATTCTCGGGTGCCAAGG \ --threads 8.
  • miRge3.0 --download-library human mirbase.

Source Doc

Excerpt From SKILL.md

Enable isomiR analysis

miRge3.0 annotate
-s sample.fastq.gz
-lib miRge3_libs
-on human
-db mirbase
--isomir
-o output_dir

Detect A-to-I editing

miRge3.0 annotate
-s sample.fastq.gz
-lib miRge3_libs
-on human
-db mirbase
--AtoI
-o output_dir

Output Files

FileDescription
miR.Counts.csvRaw read counts per miRNA
miR.RPM.csvRPM normalized counts
isomiR.Counts.csvIsomiR-level counts
isomiR.summary.csvIsomiR summary per miRNA
annotation.report.htmlInteractive QC report

Use cases

  • Use bio-small-rna-seq-mirge3-analysis for genomics and bioinformatics workflows.
  • Apply bio-small-rna-seq-mirge3-analysis to sequencing, variant, or omics analysis tasks.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Upstream Related Skills

  • smrna-preprocessing - Prepare reads for miRge3
  • mirdeep2-analysis - Alternative with novel miRNA discovery
  • differential-mirna - DE analysis of miRge3 counts

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