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bio-small-rna-seq-target-prediction
Maintainer FreedomIntelligence · Last updated April 1, 2026
Predict miRNA target genes with TargetScan or miRDB.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-small-rna-seq-target-prediction
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- miranda miRNA.fa UTRs.fa \ -sc 140 \ -en -20 \ -out predictions.txt.
- def get_validated_targets(mirna): '''Get experimentally validated targets from miRTarBase''' # Download from https://mirtarbase.cuhk.edu.cn/ mirtarbase_file = 'miRTarBase_MTI.xlsx.
- df = pd.read_excel(mirtarbase_file) validated = df[df['miRNA'] == mirna] return validated[['Target Gene', 'Experiments', 'Support Type']].
Source Doc
Excerpt From SKILL.md
Run miRanda for target prediction
miranda miRNA.fa UTRs.fa
-sc 140
-en -20
-out predictions.txt
Use cases
- Use bio-small-rna-seq-target-prediction for genomics and bioinformatics workflows.
- Apply bio-small-rna-seq-target-prediction to sequencing, variant, or omics analysis tasks.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- differential-mirna - Get DE miRNAs for target prediction
- pathway-analysis/go-enrichment - Enrich target gene functions
- database-access/entrez-fetch - Query biological databases
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