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bio-systems-biology-flux-balance-analysis

Maintainer FreedomIntelligence · Last updated April 1, 2026

Flux balance analysis (FBA) with COBRApy for metabolic network modeling.

OpenClawNanoClawAnalysisReproductionbio-systems-biology-flux-balance-analysis🧠 bioos extended suitebioos extended bioinformatics suiteflux

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-systems-biology-flux-balance-analysis

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

model = cobra.io.load_model('textbook') # E. coli core (95 reactions) model = cobra.io.load_model('iJO1366') # Full E. coli (2583 reactions).
model = cobra.io.read_sbml_model('model.xml') model = cobra.io.load_json_model('model.json').

Source Doc

Excerpt From SKILL.md

Basic FBA

import cobra

model = cobra.io.load_model('textbook')

## Run FBA (maximizes objective function, usually biomass)

solution = model.optimize()

## 0: No growth (lethal condition or missing nutrients)

print(f'Growth rate: {solution.objective_value:.4f} h^-1')
print(f'Status: {solution.status}')

Use cases

Use bio-systems-biology-flux-balance-analysis for genomics and bioinformatics workflows.
Apply bio-systems-biology-flux-balance-analysis to sequencing, variant, or omics analysis tasks.