BG
Data & Repro
bgpt-paper-search
BGPT is a remote MCP server that searches a curated database of scientific papers built from raw experimental data extracted from full-text…
K-Dense-AI/claude-scientific-skillsView
Data & Repro
BI
bio-tcr-bcr-analysis-repertoire-visualization
Maintainer FreedomIntelligence · Last updated April 1, 2026
Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-tcr-bcr-analysis-repertoire-visualization
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- CLI: vdjtools PlotFancyVJUsage for circos-style V-J plots.
- Python: matplotlib/seaborn for custom repertoire visualizations.
- Visualize my immune repertoire data" → Create publication-quality figures for TCR/BCR repertoires including circos plots, V(D)J gene usage heatmaps, diversity plots, and clonal tracking across samples. CLI: vdjtools PlotFancyVJUsage for circos-style V-J plots Python: matplotlib/seaborn for custom repertoire visualizations.
- vdjtools PlotFancyVJUsage \ -m metadata.txt \ output_dir/.
Source Doc
Excerpt From SKILL.md
Repertoire Visualization
"Visualize my immune repertoire data" → Create publication-quality figures for TCR/BCR repertoires including circos plots, V(D)J gene usage heatmaps, diversity plots, and clonal tracking across samples.
- CLI:
vdjtools PlotFancyVJUsagefor circos-style V-J plots - Python:
matplotlib/seabornfor custom repertoire visualizations
Use cases
- Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- vdjtools-analysis - Generate input data
- mixcr-analysis - Generate clonotype tables
- data-visualization/ggplot2-fundamentals - General plotting concepts
Related skills
Related skills
BI
Data & Repro
bio-chipseq-visualization
Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. Create heatmaps, profile plots, and genome browser tracks. Visualize signal a…
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & Repro
bio-consensus-sequences
Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific refer…
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & Repro
bio-copy-number-cnv-visualization
Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or oth…
FreedomIntelligence/OpenClaw-Medical-SkillsView