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bio-transcription-translation
Maintainer FreedomIntelligence · Last updated April 1, 2026
Transcribe and translate DNA sequences; handle genetic code variations.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-transcription-translation
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Convert between DNA, RNA, and protein sequences using Biopython.
- coding_dna = Seq('ATGTTTGGT') protein = coding_dna.translate() # Returns Seq('MFG').
Source Doc
Excerpt From SKILL.md
Transcription (DNA to RNA)
Transcription replaces T with U. Works on coding strand (5' to 3').
From RNA
rna = Seq('AUGUUUGGU') protein = rna.translate() # Returns Seq('MFG')
## Alternative Codon Tables
Biopython supports NCBI codon tables. Common tables:
| ID | Name | Use Case |
|----|------|----------|
| 1 | Standard | Default, most organisms |
| 2 | Vertebrate Mitochondrial | Human/vertebrate mitochondria |
| 4 | Mold Mitochondrial | Fungi, protozoa mitochondria |
| 5 | Invertebrate Mitochondrial | Insects, worms mitochondria |
| 6 | Ciliate Nuclear | Tetrahymena, Paramecium |
| 11 | Bacterial/Archaeal | Prokaryotes, plastids |
```python
Use cases
- Use bio-transcription-translation for genomics and bioinformatics workflows.
- Apply bio-transcription-translation to sequencing, variant, or omics analysis tasks.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- seq-objects - Create Seq objects for translation
- reverse-complement - Translate both strands (six-frame translation)
- codon-usage - Analyze codon bias in coding sequences
- sequence-io/read-sequences - Parse GenBank files with CDS features
- database-access/entrez-fetch - Fetch CDS sequences from NCBI for translation
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