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BI
bio-workflows-tcr-pipeline
Maintainer FreedomIntelligence · Last updated April 1, 2026
TCR/BCR: V(D)J alignment → clonotype → repertoire analysis.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-workflows-tcr-pipeline
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- mixcr align -s hsa -p rna-seq \ R1.fastq.gz R2.fastq.gz \ aligned.vdjca.
- mixcr assemble aligned.vdjca clones.clns.
Source Doc
Excerpt From SKILL.md
Export
mixcr exportClones clones.clns clones.txt
## Convert to VDJtools format
vdjtools Convert -S mixcr clones.txt vdjtools/
## Diversity metrics
vdjtools CalcDiversityStats vdjtools/clones.txt diversity/
Use cases
- Use bio-workflows-tcr-pipeline for genomics and bioinformatics workflows.
- Apply bio-workflows-tcr-pipeline to sequencing, variant, or omics analysis tasks.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- tcr-bcr-analysis/mixcr-analysis - Detailed MiXCR usage
- tcr-bcr-analysis/vdjtools-analysis - Diversity metrics
- tcr-bcr-analysis/repertoire-visualization - Plots
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