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BI
biomaster-workflows
Maintainer FreedomIntelligence · Last updated April 1, 2026
BioMaster workflow orchestration for end-to-end bioinformatics analyses.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/biomaster-workflows
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Orchestrate BioMaster’s multi-agent pipelines (RNA-seq, ChIP-seq, single-cell, Hi-C) using the provided configs and repos to deliver reproducible outputs.
- 1. Config prep: Populate YAML with tool paths, reference genomes, and workflow selection (rnaseq, chipseq, singlecell, hic). 2. Environment: cd repo && pip install -r requirements.txt (or container) prior to running. 3. Launch: python repo/run.py --config repo/config.yaml (or chosen config) and monitor progress. 4. Error recovery: Let BioMaster agents retry failing stages; review logs for missing reference/index files. 5. Output packaging: Collect BAMs/counts/peaks + QC + narrative summary of parameters and runtimes.
Source Doc
Excerpt From SKILL.md
Guardrails
- Fail fast when reference files or indices are absent to avoid wasted compute.
- Record tool versions for every stage (alignment, quantification, etc.).
- Require confirmation before deleting intermediates or rerunning destructive steps.
Use cases
- Use biomaster-workflows for single-cell or spatial omics analysis.
- Apply biomaster-workflows to clustering, integration, or trajectory workflows.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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