biomni

Core Capabilities

Biomni excels at:

1. Multi-step biological reasoning - Autonomous task decomposition and planning for complex biomedical queries
2. Code generation and execution - Dynamic analysis pipeline creation for data processing
3. Knowledge retrieval - Access to ~11GB of integrated biomedical databases and literature
4. Cross-domain problem solving - Unified interface for genomics, proteomics, drug discovery, and clinical tasks

When to Use This Skill

Use biomni for:

• CRISPR screening - Design screens, prioritize genes, analyze knockout effects
• Single-cell RNA-seq - Cell type annotation, differential expression, trajectory analysis
• Drug discovery - ADMET prediction, target identification, compound optimization
• GWAS analysis - Variant interpretation, causal gene identification, pathway enrichment
• Clinical genomics - Rare disease diagnosis, variant pathogenicity, phenotype-genotype mapping
• Lab protocols - Protocol optimization, literature synthesis, experimental design

Installation and Setup

Install Biomni and configure API keys for LLM providers:

Configure API keys (store in .env file or environment variables):

export ANTHROPIC_API_KEY="your-key-here"