bio-cfdna-preprocessing
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate remo…
Maintainer K-Dense Inc. · Last updated April 1, 2026
Access and query the Ensembl genome database, a comprehensive resource for vertebrate genomic data maintained by EMBL-EBI. The database provides gene annotations, sequences, variants, regulatory information, and comparative genomics data for over 250 species. Current release is 115 (September 2025).
Original source
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/ensembl-database
Skill Snapshot
Related skills
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate remo…
Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use when determi…
Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coord…
Query gnomAD for population allele frequencies to assess variant rarity. Use when filtering variants by population frequency for rare diseas…