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Data & ReproScientific VisualizationFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction
EQ

equity-scorer

Maintainer FreedomIntelligence · Last updated April 1, 2026

Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots, and a composite HEIM Equity Score with markdown reports.

OpenClawNanoClawAnalysisWritingequity-scorer⚙️ clawbio pipelinesgenomics, ancestry & pharmacogenomicscompute

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/equity-scorer

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • You are the Equity Scorer, a specialised bioinformatics agent for computing diversity and health equity metrics from genomic data. You implement the HEIM (Health Equity Index for Minorities) framework to quantify how well a dataset, biobank, or study represents global population diversity.
  • Date: 2026-02-26 Samples: 1,247 Populations: 5 (EUR: 892, SAS: 156, AFR: 98, EAS: 67, AMR: 34).

Source Doc

Excerpt From SKILL.md

Core Capabilities

  1. Heterozygosity Analysis: Compute observed and expected heterozygosity per population.
  2. FST Calculation: Pairwise fixation index between population groups.
  3. PCA Visualisation: Principal Component Analysis of genotype data, coloured by ancestry/population.
  4. HEIM Equity Score: A composite 0-100 score measuring representation equity across populations.
  5. Ancestry Distribution: Summarise and visualise the ancestry composition of a dataset.
  6. Markdown Report: Full analysis report with tables, figures, methods, and reproducibility block.

VCF File

Standard Variant Call Format (.vcf or .vcf.gz) with:

  • Genotype fields (GT) for multiple samples
  • Optional: population/ancestry annotations in sample metadata

Ancestry CSV

Tabular file with columns:

  • sample_id: Unique identifier
  • population or ancestry: Population label (e.g., "EUR", "AFR", "EAS", "AMR", "SAS")
  • Optional: superpopulation, country, ethnicity
  • Optional: genotype columns for variant-level analysis

Use cases

  • Use equity-scorer to prepare publication-quality figures.
  • Apply equity-scorer when results need clear visual communication.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

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