AD
Data & Repro
Adaptyv
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein sequences via API or…
K-Dense-AI/claude-scientific-skillsView
Data & Repro
FO
foldseek
Maintainer FreedomIntelligence · Last updated April 1, 2026
Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases, (2) Structural homology search, (3) Database queries by 3D structure, (4) Finding remote homologs not detected by sequence, (5) Clustering structures by similarity. For sequence similarity, use uniprot BLAST. For structure prediction, use chai or boltz.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/foldseek
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- curl -X POST "https://search.foldseek.com/api/ticket" \ -F "[email protected]" \ -F "database[]=afdb50" \ -F "database[]=pdb100".
- conda install -c conda-forge -c bioconda foldseek.
Source Doc
Excerpt From SKILL.md
Prerequisites
| Requirement | Minimum | Recommended |
|---|---|---|
| Python | 3.8+ | 3.10 |
| RAM | 8GB | 16GB |
| Disk | 10GB | 50GB (for local databases) |
How to run
Note: Foldseek can run locally or via web server. No GPU required.
Search PDB
foldseek easy-search query.pdb /path/to/pdb100 results.m8 tmp/
Use cases
- Use foldseek in research workflows aligned with this subject area.
- Follow the upstream documentation for the full working procedure.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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