AD
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Data & Repro
GG
gget
Maintainer K-Dense Inc. · Last updated April 1, 2026
gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and analysis methods. Query gene information, sequence analysis, protein structures, expression data, and disease associations through a consistent interface. All gget modules work both as command-line tools and as Python functions. **Important**: The databases queried by gget are continuously updated, whi….
Original source
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/gget
- Maintainer
- K-Dense Inc.
- License
- BSD-2-Clause license
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and analysis methods. Query gene information, sequence analysis, protein structures, expression data, and disease associations through a consistent interface. All gget modules work both as command-line tools and as Python functions.
- Important: The databases queried by gget are continuously updated, which sometimes changes their structure. gget modules are tested automatically on a biweekly basis and updated to match new database structures when necessary.
- uv pip install --upgrade gget.
Source Doc
Excerpt From SKILL.md
Installation
Install gget in a clean virtual environment to avoid conflicts:
## Quick Start
Basic usage pattern for all modules:
```bash
## Command-line
gget <module> [arguments] [options]
Use cases
- Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis.
- Use gget in research workflows aligned with this subject area.
- Follow the upstream documentation for the full working procedure.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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