Data & ReproProteomics & MetabolomicsK-Dense-AI/claude-scientific-skillsData & Reproduction
HM

HMDB (Human Metabolome Database)

Maintainer K-Dense Inc. · Last updated April 1, 2026

The Human Metabolome Database (HMDB) is a comprehensive, freely available resource containing detailed information about small molecule metabolites found in the human body.

Claude CodeOpenClawNanoClawAnalysisReproductionhmdb-databasechemistrydatabasegeneral

Original source

K-Dense-AI/claude-scientific-skills

https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/hmdb-database

Maintainer
K-Dense Inc.
License
HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Use cases

  • Use HMDB (Human Metabolome Database) in research workflows aligned with this subject area.
  • Follow the upstream documentation for the full working procedure.
  • Use hmdb-database in research workflows aligned with this subject area.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

Related skills

Related skills

Back to directory
BI
Data & ReproProteomics & Metabolomics

bio-metabolomics-metabolite-annotation

Metabolite identification from m/z and retention time. Covers database matching, MS/MS spectral matching, and confidence level assignment. U…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproProteomics & Metabolomics

bio-metabolomics-pathway-mapping

Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when i…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproProteomics & Metabolomics

bio-proteomics-spectral-libraries

Build, manage, and search spectral libraries for proteomics. Use when creating or working with spectral libraries for DIA analysis. Covers D…

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & ReproProteomics & Metabolomics

bio-workflows-proteomics-pipeline

DDA/DIA proteomics: search → quantification → differential abundance.

OpenClawNanoClawAnalysis
FreedomIntelligence/OpenClaw-Medical-SkillsView