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jaspar-database

Maintainer Kuan-lin Huang · Last updated April 1, 2026

JASPAR (https://jaspar.elixir.no/) is the gold-standard open-access database of curated, non-redundant transcription factor (TF) binding profiles stored as position frequency matrices (PFMs). JASPAR 2024 contains 1,210 non-redundant TF binding profiles for 164 eukaryotic species. Each profile is experimentally derived (ChIP-seq, SELEX, HT-SELEX, protein binding microarray, etc.) and rigorously validated.

Claude CodeOpenClawNanoClawAnalysisReproductionjaspar-databasebioinformaticsdatabasegeneral

Original source

K-Dense-AI/claude-scientific-skills

https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/jaspar-database

Maintainer
Kuan-lin Huang
License
CC0-1.0
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Use cases

  • Use jaspar-database in research workflows aligned with this subject area.
  • Follow the upstream documentation for the full working procedure.
  • **TF binding site prediction**: Scan a DNA sequence for potential binding sites of a TF.
  • **Regulatory variant interpretation**: Does a GWAS/eQTL variant disrupt a TF binding motif?

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

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