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Data & Repro
LA
LatchBio Integration
Maintainer K-Dense Inc. · Last updated April 1, 2026
Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines.
Original source
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/latchbio-integration
- Maintainer
- K-Dense Inc.
- License
- Unknown
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines.
- python3 -m uv pip install latch.
Source Doc
Excerpt From SKILL.md
Core Capabilities
The Latch platform provides four main areas of functionality:
1. Workflow Creation and Deployment
- Define serverless workflows using Python decorators
- Support for native Python, Nextflow, and Snakemake pipelines
- Automatic containerization with Docker
- Auto-generated no-code user interfaces
- Version control and reproducibility
2. Data Management
- Cloud storage abstractions (LatchFile, LatchDir)
- Structured data organization with Registry (Projects → Tables → Records)
- Type-safe data operations with links and enums
- Automatic file transfer between local and cloud
- Glob pattern matching for file selection
Use cases
- Create a Latch workflow for RNA-seq analysis.
- Deploy my pipeline to Latch.
- Convert my Nextflow pipeline to Latch.
- Add GPU support to my workflow.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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