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mcpmed-bioinformatics-server
Maintainer FreedomIntelligence · Last updated April 1, 2026
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Adapts the Model Context Protocol (MCP) to bioinformatics web server backends. This creates a standardized, machine-actionable layer for LLMs to interact with external biological resources, matching the 2026 standard for agentic tools.
- Query STRING database for protein-protein interactions via MCP.
- Fetch dataset metadata from GEO using MCPmed.
- Access UCSC Cell Browser data through MCP.
- Query STRING database for protein-protein interactions via MCP" "Fetch dataset metadata from GEO using MCPmed" * "Access UCSC Cell Browser data through MCP.
Source Doc
Excerpt From SKILL.md
Core Capabilities
- GEO Integration: Search and retrieve Gene Expression Omnibus metadata autonomously.
- STRING DB Access: Query protein-protein interaction networks contextually.
- UCSC Cell Browser: Programmatic access to single-cell datasets.
Workflow
- Step 1: Start the MCPmed server to expose the bioinformatics backend tools.
- Step 2: Connect the LLM client using MCP to query the integrated databases.
Example Usage
User: "Query the STRING database for interactions with TP53."
Agent Action:
Use cases
- Query STRING database for protein-protein interactions via MCP.
- Fetch dataset metadata from GEO using MCPmed.
- Access UCSC Cell Browser data through MCP.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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