AR
Data & Repro
armored-cart-design-agent
Design armored CAR-T cells with cytokine payloads and resistance mechanisms.
FreedomIntelligence/OpenClaw-Medical-SkillsView
Data & Repro
MI
microbiome-cancer-agent
Maintainer FreedomIntelligence · Last updated April 1, 2026
Tumor microbiome analysis and its role in cancer progression and immunotherapy response.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/microbiome-cancer-agent
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- The Microbiome-Cancer Interaction Agent analyzes relationships between the microbiome and cancer, including tumor-associated bacteria, gut microbiome effects on immunotherapy, and microbiome-targeted therapeutic strategies.
- When analyzing tumor microbiome composition from sequencing data.
- To predict immunotherapy response based on gut microbiome profiles.
- For identifying microbiome-based biomarkers in cancer.
- When assessing antibiotic impact on cancer treatment efficacy.
Source Doc
Excerpt From SKILL.md
Core Capabilities
-
Tumor Microbiome Analysis: Profile intratumoral bacteria from tumor sequencing data.
-
Gut-Cancer Axis: Analyze fecal microbiome associations with cancer outcomes.
-
ICI Response Prediction: Predict checkpoint inhibitor response from microbiome.
-
Metabolite Profiling: Link microbial metabolites to cancer phenotypes.
-
Antibiotic Impact: Model antibiotic effects on treatment efficacy.
-
FMT/Probiotic Design: Support microbiome-modulating interventions.
Microbiome-Cancer Associations
| Cancer Type | Key Bacteria | Association |
|---|---|---|
| Colorectal | Fusobacterium nucleatum | Promotion, poor prognosis |
| Colorectal | Bacteroides fragilis (ETBF) | Carcinogenesis |
| Gastric | Helicobacter pylori | Established carcinogen |
| Pancreatic | Gammaproteobacteria | Drug metabolism |
| Breast | Fusobacterium | Metastasis |
| Oral | Porphyromonas gingivalis | Oral SCC |
Workflow
-
Input: 16S/shotgun metagenomics, tumor sequencing, clinical data.
-
Taxonomy Profiling: Identify bacterial composition at genus/species level.
-
Diversity Analysis: Calculate alpha and beta diversity metrics.
-
Association Testing: Correlate microbiome with outcomes.
-
Functional Prediction: Infer metabolic potential (PICRUSt2, HUMAnN).
-
Prediction Modeling: Build response prediction models.
-
Output: Microbiome profile, associations, predictions, interventions.
Use cases
- Use microbiome-cancer-agent for clinical, translational, or medical research tasks.
- Apply microbiome-cancer-agent when healthcare-specific guidance is required.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- Metagenomics - For general microbiome analysis
- Immune_Checkpoint_Combination_Agent - For ICI optimization
- Metabolomics - For metabolite analysis
Related skills
Related skills
AR
Data & Repro
arxiv-search
Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.
FreedomIntelligence/OpenClaw-Medical-SkillsView
AU
Data & Repro
autonomous-oncology-agent
Autonomous oncology research agent: literature mining, trial matching, biomarker analysis, and treatment hypothesis generation.
FreedomIntelligence/OpenClaw-Medical-SkillsView
BI
Data & Repro
bio-cfdna-preprocessing
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate remo…
FreedomIntelligence/OpenClaw-Medical-SkillsView