AG
Data & Repro
agent-browser
Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test w…
FreedomIntelligence/OpenClaw-Medical-SkillsView
Data & Repro
NG
ngs-analysis
Maintainer FreedomIntelligence · Last updated April 1, 2026
Next-generation sequencing data analysis orchestration and QC.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/ngs-analysis
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- conda install -c bioconda sra-tools.
- prefetch SRR12345678 fastq-dump --split-files --gzip SRR12345678.
Source Doc
Excerpt From SKILL.md
Parallel download with fasterq-dump
fasterq-dump --split-files -e 8 SRR12345678 gzip SRR12345678_*.fastq
## MultiQC aggregation
multiqc fastqc_output/ -o multiqc_report/
## Trimming with fastp
fastp -i R1.fastq.gz -I R2.fastq.gz \
-o R1_trimmed.fastq.gz -O R2_trimmed.fastq.gz \
--detect_adapter_for_pe --thread 8 \
--html fastp_report.html
Use cases
- Use ngs-analysis for genomics and bioinformatics workflows.
- Apply ngs-analysis to sequencing, variant, or omics analysis tasks.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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