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ontology-mapper
Maintainer FreedomIntelligence · Last updated April 1, 2026
Map materials science terms, crystal structures, and sample descriptions to ontology classes and properties. Supports any ontology registered in ontology_registry.json. Use when translating natural-language material descriptions to ontology terms, annotating simulation inputs with ontology metadata, or mapping crystal parameters (space group, Bravais lattice, lattice constants) to standardized ontology representatio….
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/ontology-mapper
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Translate real-world materials science descriptions into standardized ontology annotations. Given terms like "FCC copper" or structured data like {"material": "iron", "structure": "BCC", "lattice_a": 2.87}, produce the corresponding ontology classes and properties for any registered ontology.
- python3 skills/ontology/ontology-mapper/scripts/concept_mapper.py \ --ontology cmso --term "space group" --json.
Source Doc
Excerpt From SKILL.md
Requirements
- Python 3.8+
- No external dependencies (Python standard library only)
- Requires ontology-explorer's summary JSON and
ontology_registry.json - Per-ontology mapping config (
<name>_mappings.json) for ontology-specific synonyms and labels
Inputs to Gather
| Input | Description | Example |
|---|---|---|
| Ontology | Ontology name from registry | cmso, asmo |
| Term(s) | Natural-language materials concept(s) | "unit cell", "FCC,copper,lattice" |
| Crystal system | One of the 7 crystal systems | cubic, hexagonal |
| Bravais lattice | Lattice type (symbol or common name) | FCC, cF, BCC |
| Space group | Space group number (1-230) | 225 |
| Lattice parameters | a, b, c in angstroms; alpha, beta, gamma in degrees | a=3.615 |
| Sample description | JSON dict with material properties | {"material":"copper","structure":"FCC"} |
Script Outputs (JSON Fields)
| Script | Key Outputs |
|---|---|
scripts/concept_mapper.py | results.matches, results.unmatched, results.suggestions |
scripts/crystal_mapper.py | results.ontology_classes, results.ontology_properties, results.effective_system, results.bravais_lattice, results.validation_warnings |
scripts/sample_annotator.py | results.annotations, results.sample_type, results.material_type, results.unmapped_fields, results.suggested_properties |
Use cases
- Use when translating natural-language material descriptions to ontology terms, annotating simulation inputs with ontology metadata, or mapping crystal parameters (space group, Bravais lattice, lattice constants) to standardized ontology representations.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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