Data & ReproMaterials, Engineering & SimulationFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

ontology-validator

Maintainer FreedomIntelligence · Last updated April 1, 2026

Validate material sample annotations and data structures against ontology constraints. Use when checking if CMSO annotations are correct, verifying that required properties are present, or validating that object property relationships have consistent domain and range. Catches unknown classes, unknown properties, domain mismatches, and missing required fields.

OpenClawNanoClawAnalysisReproductionontology-validator📊 data science & toolscomputational simulation & ontologyvalidate

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/ontology-validator

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

Validate that material sample annotations comply with ontology constraints: correct class names, valid properties, consistent domain/range relationships, and required fields present.
python3 skills/ontology/ontology-validator/scripts/schema_checker.py \ --ontology cmso \ --annotation '{"class":"Unit Cell","properties":{"has Bravais lattice":"cF"}}' \ --json.

Source Doc

Excerpt From SKILL.md

Requirements

Python 3.8+
No external dependencies (Python standard library only)
Requires ontology-explorer's cmso_summary.json and ontology_registry.json

Inputs to Gather

Input	Description	Example
Annotation	JSON dict or list of annotation dicts	`{"class":"UnitCell","properties":{"has Bravais lattice":"cF"}}`
Class name	Class to check completeness for	`Crystal Structure`
Provided properties	Comma-separated property names	`"has unit cell,has space group"`
Relationships	JSON array of subject-property-object triples	`[{"subject_class":"Material","property":"has structure","object_class":"Crystal Structure"}]`

Script Outputs (JSON Fields)

Script	Key Outputs
`scripts/schema_checker.py`	`results.valid`, `results.errors`, `results.warnings`, `results.class_valid`, `results.properties_valid`
`scripts/completeness_checker.py`	`results.completeness_score`, `results.required_missing`, `results.recommended_missing`, `results.optional_missing`, `results.unrecognized`
`scripts/relationship_checker.py`	`results.valid`, `results.results`, `results.errors`

Use cases

Use when checking if CMSO annotations are correct, verifying that required properties are present, or validating that object property relationships have consistent domain and range.

Not for

Do not rely on this catalog entry alone for installation or maintenance details.

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