Data & ReproScientific VisualizationK-Dense-AI/claude-scientific-skillsData & Reproduction
OP

Opentrons Integration

Maintainer K-Dense Inc. · Last updated April 1, 2026

Opentrons is a Python-based lab automation platform for Flex and OT-2 robots. Write Protocol API v2 protocols for liquid handling, control hardware modules (heater-shaker, thermocycler), manage labware, for automated pipetting workflows.

Claude CodeOpenClawNanoClawAnalysisWritingopentrons-integrationscientific-communicationintegrationlaboratory automation

Original source

K-Dense-AI/claude-scientific-skills

https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/opentrons-integration

Maintainer
K-Dense Inc.
License
Unknown
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • Opentrons is a Python-based lab automation platform for Flex and OT-2 robots. Write Protocol API v2 protocols for liquid handling, control hardware modules (heater-shaker, thermocycler), manage labware, for automated pipetting workflows.
  • metadata = { 'protocolName': 'My Protocol', 'author': 'Name <[email protected]>', 'description': 'Protocol description', 'apiLevel': '2.19' # Use latest available API version }.

Source Doc

Excerpt From SKILL.md

When to Use This Skill

This skill should be used when:

  • Writing Opentrons Protocol API v2 protocols in Python
  • Automating liquid handling workflows on Flex or OT-2 robots
  • Controlling hardware modules (temperature, magnetic, heater-shaker, thermocycler)
  • Setting up labware configurations and deck layouts
  • Implementing complex pipetting operations (serial dilutions, plate replication, PCR setup)
  • Managing tip usage and optimizing protocol efficiency
  • Working with multi-channel pipettes for 96-well plate operations
  • Simulating and testing protocols before robot execution

1. Protocol Structure and Metadata

Every Opentrons protocol follows a standard structure:

from opentrons import protocol_api

## Requirements (optional)

requirements = {
    'robotType': 'Flex',  # or 'OT-2'
    'apiLevel': '2.19'
}

Use cases

  • Writing Opentrons Protocol API v2 protocols in Python.
  • Automating liquid handling workflows on Flex or OT-2 robots.
  • Controlling hardware modules (temperature, magnetic, heater-shaker, thermocycler).
  • Setting up labware configurations and deck layouts.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

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