AD
Data & Repro
Adaptyv
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein sequences via API or…
K-Dense-AI/claude-scientific-skillsView
Data & Repro
PR
proteinmpnn
Maintainer FreedomIntelligence · Last updated April 1, 2026
Design protein sequences using ProteinMPNN inverse folding. Use this skill when: (1) Designing sequences for RFdiffusion backbones, (2) Redesigning existing protein sequences, (3) Fixing specific residues while designing others, (4) Optimizing sequences for expression or stability, (5) Multi-state or negative design. For backbone generation, use rfdiffusion or bindcraft. For ligand-aware design, use ligandmpnn. For….
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/proteinmpnn
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- -bias_AA_jsonl '{"A": {"A": 1.5, "W": -2.0}}.
- -omit_AAs "CM" # No cysteine or methionine.
Source Doc
Excerpt From SKILL.md
Prerequisites
| Requirement | Minimum | Recommended |
|---|---|---|
| Python | 3.8+ | 3.10 |
| CUDA | 11.0+ | 11.7+ |
| GPU VRAM | 8GB | 16GB (T4) |
| RAM | 8GB | 16GB |
How to run
First time? See Installation Guide to set up Modal and biomodals.
Option 1: Local installation (recommended)
GPU: T4 (16GB) sufficient | Time: ~50-100 sequences/minute
Use cases
- Use proteinmpnn in research workflows aligned with this subject area.
- Follow the upstream documentation for the full working procedure.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Related skills
Related skills
AL
Data & Repro
alphafold
Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences fold correctly, (2) P…
FreedomIntelligence/OpenClaw-Medical-SkillsView
AL
Data & Repro
AlphaFold DB
AlphaFold DB is a public repository of AI-predicted 3D protein structures for over 200 million proteins, maintained by DeepMind and EMBL-EBI…
K-Dense-AI/claude-scientific-skillsView
AN
Data & Repro
antibody-design-agent
Antibody design: epitope mapping, CDR engineering, bispecific construction.
FreedomIntelligence/OpenClaw-Medical-SkillsView