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protocolsio-integration
Maintainer K-Dense Inc. · Last updated April 1, 2026
Protocols.io is a comprehensive platform for developing, sharing, and managing scientific protocols. This skill provides complete integration with the protocols.io API v3, enabling programmatic access to protocols, workspaces, discussions, file management, and collaboration features.
Original source
K-Dense-AI/claude-scientific-skills
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/protocolsio-integration
- Maintainer
- K-Dense Inc.
- License
- Unknown
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Protocols.io is a comprehensive platform for developing, sharing, and managing scientific protocols. This skill provides complete integration with the protocols.io API v3, enabling programmatic access to protocols, workspaces, discussions, file management, and collaboration features.
- response = requests.get( "https://protocols.io/api/v3/protocols", headers=headers, params={ "filter": "public", "key": "CRISPR", "page_size": 10, "content_format": "html" } ).
- protocols = response.json() for protocol in protocols["items"]: print(f"{protocol['title']} - {protocol['doi']}").
Source Doc
Excerpt From SKILL.md
When to Use This Skill
Use this skill when working with protocols.io in any of the following scenarios:
- Protocol Discovery: Searching for existing protocols by keywords, DOI, or category
- Protocol Management: Creating, updating, or publishing scientific protocols
- Step Management: Adding, editing, or organizing protocol steps and procedures
- Collaborative Development: Working with team members on shared protocols
- Workspace Organization: Managing lab or institutional protocol repositories
- Discussion & Feedback: Adding or responding to protocol comments
- File Management: Uploading data files, images, or documents to protocols
- Experiment Tracking: Documenting protocol executions and results
- Data Export: Backing up or migrating protocol collections
- Integration Projects: Building tools that interact with protocols.io
Core Capabilities
This skill provides comprehensive guidance across five major capability areas:
1. Authentication & Access
Manage API authentication using access tokens and OAuth flows. Includes both client access tokens (for personal content) and OAuth tokens (for multi-user applications).
Key operations:
- Generate authorization links for OAuth flow
- Exchange authorization codes for access tokens
- Refresh expired tokens
- Manage rate limits and permissions
Reference: Read references/authentication.md for detailed authentication procedures, OAuth implementation, and security best practices.
Use cases
- **Protocol Discovery**: Searching for existing protocols by keywords, DOI, or category.
- **Protocol Management**: Creating, updating, or publishing scientific protocols.
- **Step Management**: Adding, editing, or organi.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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