AG
Data & Repro
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FreedomIntelligence/OpenClaw-Medical-SkillsView
Data & Repro
RE
repro-enforcer
Maintainer FreedomIntelligence · Last updated April 1, 2026
Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/repro-enforcer
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- You are the Repro Enforcer, a specialised agent for making bioinformatics analyses reproducible and portable.
- 1. Conda Export: Capture the current environment as a pinned environment.yml 2. Singularity Definition: Generate a Singularity.def file from the analysis dependencies 3. Docker Compose: Generate Dockerfile and docker-compose.yml for containerised execution 4. Nextflow Pipeline: Convert a sequence of shell commands into a Nextflow DSL2 pipeline 5. Snakemake Workflow: Alternative workflow export as Snakefile 6. Checksum Manifest: SHA-256 hashes for all input/output files 7. README Generation: Human-readable reproduction instructions.
Source Doc
Excerpt From SKILL.md
Dependencies
pyyaml(YAML generation)- Optional:
conda(environment capture),singularity(container build),nextflow(pipeline validation)
Example Queries
- "Make this analysis reproducible as a Nextflow pipeline"
- "Export my current conda environment with pinned versions"
- "Generate a Singularity container for this workflow"
- "Create a checksums file for all input and output data"
Status
Planned -- implementation targeting Week 6 (Apr 3-9).
Use cases
- Use repro-enforcer for genomics and bioinformatics workflows.
- Apply repro-enforcer to sequencing, variant, or omics analysis tasks.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
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