bio-chipseq-visualization
Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. Create heatmaps, profile plots, and genome browser tracks. Visualize signal a…
Maintainer K-Dense Inc. · Last updated April 1, 2026
SHAP is a unified approach to explain machine learning model outputs using Shapley values from cooperative game theory. This skill provides comprehensive guidance for: - Computing SHAP values for any model type - Creating visuali.
Original source
https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/shap
Skill Snapshot
Source Doc
Trigger this skill when users ask about:
Decision Tree:
Tree-based model? (XGBoost, LightGBM, CatBoost, Random Forest, Gradient Boosting)
shap.TreeExplainer (fast, exact)Deep neural network? (TensorFlow, PyTorch, Keras, CNNs, RNNs, Transformers)
shap.DeepExplainer or shap.GradientExplainerLinear model? (Linear/Logistic Regression, GLMs)
shap.LinearExplainer (extremely fast)Any other model? (SVMs, custom functions, black-box models)
shap.KernelExplainer (model-agnostic but slower)Unsure?
shap.Explainer (automatically selects best algorithm)See references/explainers.md for detailed information on all explainer types.
explainer = shap.TreeExplainer(model)
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