Data & ReproSingle-Cell & Spatial OmicsFreedomIntelligence/OpenClaw-Medical-SkillsData & Reproduction

single-cell-annotation-skills-with-omicverse

Maintainer FreedomIntelligence · Last updated April 1, 2026

Use this skill to reproduce and adapt the single-cell annotation playbook captured in omicverse tutorials: SCSA [`t_cellanno.ipynb`](../../../omicverse_guide/docs/Tutorials-single/t_cellanno.ipynb), MetaTiME [`t_metatime.ipynb`](../../../omicverse_guide/docs/Tutorials-single/t_metatime.ipynb), CellVote [`t_cellvote.md`](../../../omicverse_guide/docs/Tutorials-single/t_cellvote.md) & [`t_cellvote_pbmc3k.ipynb`](../..….

OpenClawNanoClawAnalysisReproductionsingle-annotation🔬 omics & computational biologysingle-cell & spatial omicsguide

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-annotation

Maintainer: FreedomIntelligence
License: MIT
Last updated: April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

Use this skill to reproduce and adapt the single-cell annotation playbook captured in omicverse tutorials: SCSA t_cellanno.ipynb, MetaTiME t_metatime.ipynb, CellVote t_cellvote.md & t_cellvote_pbmc3k.ipynb, CellMatch t_cellmatch.ipynb, GPTAnno t_gptanno.ipynb, and label transfer t_anno_trans.ipynb. Each section below highlights required inputs, training/inference steps, and how to read the outputs.
scsa = ov.single.pySCSA( adata, foldchange=1.5, pvalue=0.01, species='Human', tissue='All', target='cellmarker' # or 'panglaodb' ).

Source Doc

Excerpt From SKILL.md

Overview

Use this skill to reproduce and adapt the single-cell annotation playbook captured in omicverse tutorials: SCSA t_cellanno.ipynb, MetaTiME t_metatime.ipynb, CellVote t_cellvote.md & t_cellvote_pbmc3k.ipynb, CellMatch t_cellmatch.ipynb, GPTAnno t_gptanno.ipynb, and label transfer t_anno_trans.ipynb. Each section below highlights required inputs, training/inference steps, and how to read the outputs.

Use cases

Use single-cell-annotation-skills-with-omicverse for single-cell or spatial omics analysis.
Apply single-cell-annotation-skills-with-omicverse to clustering, integration, or trajectory workflows.

Not for

Do not rely on this catalog entry alone for installation or maintenance details.

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