CE
Automation
cellular-senescence-agent
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FreedomIntelligence/OpenClaw-Medical-SkillsView
Automation
SP
spatial-neighbors
Maintainer FreedomIntelligence · Last updated April 1, 2026
spatial-neighbors.
Original source
FreedomIntelligence/OpenClaw-Medical-Skills
https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/spatial-neighbors
- Maintainer
- FreedomIntelligence
- License
- MIT
- Last updated
- April 1, 2026
Skill Snapshot
Key Details From SKILL.md
Key Notes
- Build spatial neighbor graphs for connectivity-based analyses.
- sq.gr.spatial_neighbors(adata, n_neighs=6, coord_type='generic').
Source Doc
Excerpt From SKILL.md
Check the graph
print(f"Connectivities shape: {adata.obsp['spatial_connectivities'].shape}") print(f"Distances shape: {adata.obsp['spatial_distances'].shape}")
## Delaunay triangulation (natural neighbors)
sq.gr.spatial_neighbors(adata, delaunay=True, coord_type='generic')
Connect all spots within a radius
sq.gr.spatial_neighbors(adata, radius=100, coord_type='generic')
Use cases
- Use spatial-neighbors in research workflows aligned with this subject area.
- Follow the upstream documentation for the full working procedure.
Not for
- Do not rely on this catalog entry alone for installation or maintenance details.
Upstream Related Skills
- spatial-statistics - Use neighbor graph for spatial statistics
- spatial-domains - Identify domains using spatial graph
- single-cell/clustering - Non-spatial neighbor graphs
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