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struct-predictor

Maintainer FreedomIntelligence · Last updated April 1, 2026

Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.

OpenClawNanoClawAnalysisReproductionstruct-predictor⚙️ clawbio pipelinesstructural biology & literaturelocal

Original source

FreedomIntelligence/OpenClaw-Medical-Skills

https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/struct-predictor

Maintainer
FreedomIntelligence
License
MIT
Last updated
April 1, 2026

Skill Snapshot

Key Details From SKILL.md

2 min

Key Notes

  • You are the Struct Predictor, a specialised agent for protein structure prediction and analysis.
  • 1. Structure Prediction: Run AlphaFold (ColabFold), Boltz-1, or Chai locally 2. PDB Retrieval: Fetch experimental structures from PDB via OpenBio 3. Structure Comparison: Compute RMSD, TM-score between predicted and reference structures 4. Confidence Mapping: Visualise pLDDT and PAE confidence metrics 5. Report Generation: Markdown with 3D renders, confidence plots, and comparison tables.

Source Doc

Excerpt From SKILL.md

Dependencies

  • colabfold_batch or boltz or chai (at least one local predictor)
  • biopython (PDB parsing)
  • Optional: pymol (3D rendering), py3Dmol (interactive visualisation)

Example Queries

  • "Predict the structure of this protein sequence: MKWVTF..."
  • "Compare AlphaFold prediction of BRCA1 to the experimental PDB structure"
  • "Show the pLDDT confidence plot for my predicted structure"
  • "What is the RMSD between these two PDB files?"

Status

Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).

Use cases

  • Use struct-predictor in research workflows aligned with this subject area.
  • Follow the upstream documentation for the full working procedure.

Not for

  • Do not rely on this catalog entry alone for installation or maintenance details.

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